The anatomy, affinity and phylogenetic significance of Markuelia
Dong, X., Donoghue, P. C. J., Cunningham, J., Liu, J. and Cheng, H.
Evolution & Development 7: 468-482 (2005)

Basal tissue structure in the earliest euconodonts: testing hypotheses of developmental plasticity in euconodont phylogeny
Dong, X., Donoghue, P. C. J. and Repetski, J. E.
Palaeontology 48: 411-421 (2005)

The fossils of Orsten-type preservation from Middle and Upper Cambrian in Hunan, China
Dong, X.-p., Donoghue, P. C. J., Liu, Z., Liu, J. and Peng, F.
Chinese Science Bulletin 50: 1352-1357 (2005)

Saving the stem-group - a contradiction in terms
Donoghue, P. C. J.
Paleobiology 31: 553-558 (2005)

Carl Gegenbaur and evolutionary morphology
Donoghue, P. C. J.
Acta Zoologica 85: 265-266 (2005)

Embryos and ancestors
Donoghue, P. C. J. and Dong, X. P.
In D. E. G. Briggs (ed.) Evolving form and function: fossils and development. Yale Peabody Museum of Natural History, Yale University, New Haven. pp. 81-99 (2005)

Genome duplication, extinction and vertebrate evolution
Donoghue, P. C. J. and Purnell, M. A.
Trends in Ecology & Evolution 20: 312-319 (2005)

Between death and data: biases in interpretation of the fossil record of conodonts
Purnell, M. A. and Donoghue, P. C. J.
Special Papers in Palaeontology 73: 7-25 (2005)

Histology and affinity of the earliest armoured vertebrate
Sansom, I. J., Donoghue, P. C. J. and Albanesi, G. L.
Biology Letters 2: 446-449 (2005)

The apparatus composition and architecture of Cordylodus Pander - concepts of homology in primitive conodonts
Smith, M. P., Donoghue, P. C. J. and Repetski, J. E.
In. Barrick, J. E. and Lane, H. R. (eds) A standing ovation: papers in honor of Gilbert Klapper. Bulletins of American Paleontology 369: 19-33 (2005)

Histology of the galeaspid dermoskeleton and endoskeleton, and the origin and early evolution of the vertebrate cranial endoskeleton
Wang, N. Z., Donoghue, P. C. J., Smith, M. M. and Sansom, I. J.
Journal of Vertebrate Paleontology 25: 745-756 (2005)

Cladograms, phylogenies and the veracity of the conodont fossil record
Wickström, L. M. and Donoghue, P. C. J.
Special Papers in Palaeontology 73: 185-218 (2005)